Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024981-SRR6024982/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  182,353,993
 Normal Paired: 173,131,810 (94.94%)
 Chimeric Paired: 6,916,615 (3.79%)
 Chimeric Ambiguous: 623,882 (0.34%)
 Unmapped: 1,681,686 (0.92%)
 Ligation Motif Present: 53,553 (0.03%)
Alignable (Normal+Chimeric Paired): 180,048,425 (98.74%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-07T04:21:54,328]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 48,112,862 (26.38%)
PCR Duplicates: 131,935,563 (72.35%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 49,404,143
Intra-fragment Reads: 22,757,203 (12.48% / 47.30%)
Below MAPQ Threshold: 6,589,855 (3.61% / 13.70%)
Hi-C Contacts: 18,765,804 (10.29% / 39.00%)
 Ligation Motif Present: 11,123  (0.01% / 0.02%)
 3' Bias (Long Range): 78% - 22%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,558,818  (1.95% / 7.40%)
Intra-chromosomal: 15,206,986  (8.34% / 31.61%)
Short Range (<20Kb): 9,478,072  (5.20% / 19.70%)
Long Range (>20Kb): 5,728,833  (3.14% / 11.91%)